Variant report

Variant	rs17443078
Chromosome Location	chr12:40568798-40568799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10506144	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs10506147	0.86[EUR][1000 genomes]
rs10506154	1.00[CEU][hapmap]
rs11174697	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11175186	0.93[EUR][1000 genomes]
rs11175593	0.86[EUR][1000 genomes]
rs11564107	0.86[EUR][1000 genomes]
rs11564152	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564153	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564185	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564187	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564199	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564209	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11564210	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11564212	0.86[EUR][1000 genomes]
rs11564216	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11564266	1.00[CEU][hapmap]
rs11564271	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12422544	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12422796	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs12424040	0.93[EUR][1000 genomes]
rs12426378	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12426639	1.00[CEU][hapmap]
rs12427245	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1365768	1.00[CEU][hapmap]
rs1365769	1.00[CEU][hapmap]
rs1388585	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1388597	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1463717	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17442924	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443178	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17443185	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443206	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17443600	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443656	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17443909	0.86[EUR][1000 genomes]
rs17444028	0.81[EUR][1000 genomes]
rs17444054	0.81[EUR][1000 genomes]
rs17444103	1.00[CEU][hapmap]
rs17458549	0.93[EUR][1000 genomes]
rs17458808	0.93[EUR][1000 genomes]
rs17461575	0.86[EUR][1000 genomes]
rs17461664	0.81[EUR][1000 genomes]
rs17465610	0.86[EUR][1000 genomes]
rs17465946	0.86[EUR][1000 genomes]
rs17466016	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17466626	1.00[CEU][hapmap]
rs17484003	0.93[EUR][1000 genomes]
rs17484342	0.81[EUR][1000 genomes]
rs17484493	1.00[CEU][hapmap]
rs2638223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2708460	1.00[EUR][1000 genomes]
rs28365169	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28365173	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28365229	1.00[CEU][hapmap]
rs28365689	0.93[EUR][1000 genomes]
rs28370649	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28370650	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs28370664	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28370682	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28370830	0.86[EUR][1000 genomes]
rs36212067	0.81[EUR][1000 genomes]
rs36220738	0.81[EUR][1000 genomes]
rs3789329	1.00[CEU][hapmap]
rs4628750	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4767965	0.86[EUR][1000 genomes]
rs4768213	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4768226	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4768228	0.81[EUR][1000 genomes]
rs72547977	0.86[EUR][1000 genomes]
rs729215	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv899030	chr12:40509341-40580440	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899031	chr12:40520684-40580440	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1045516	chr12:40543200-40589557	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
5	esv3398206	chr12:40556364-40581392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40566400-40568800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr12:40566600-40568800	Weak transcription	Primary monocytes fromperipheralblood	blood

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