Variant report

Variant	rs36212067
Chromosome Location	chr12:40677599-40677600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10506144	0.87[EUR][1000 genomes]
rs10506147	0.94[EUR][1000 genomes]
rs10506154	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11175186	0.87[EUR][1000 genomes]
rs11175593	0.94[EUR][1000 genomes]
rs11564107	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11564152	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11564153	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564185	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564187	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564209	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564210	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11564212	0.94[EUR][1000 genomes]
rs11564216	0.87[EUR][1000 genomes]
rs11564266	0.85[AMR][1000 genomes]
rs11564271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12422278	0.83[AMR][1000 genomes]
rs12422527	0.83[AMR][1000 genomes]
rs12422544	0.87[EUR][1000 genomes]
rs12422796	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12423419	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12423551	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12426639	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12427245	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1365768	0.85[AMR][1000 genomes]
rs1365769	0.85[AMR][1000 genomes]
rs1388597	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1463717	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17442924	0.81[EUR][1000 genomes]
rs17443078	0.81[EUR][1000 genomes]
rs17443185	0.81[EUR][1000 genomes]
rs17443206	0.81[EUR][1000 genomes]
rs17443600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17443909	0.81[EUR][1000 genomes]
rs17444028	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17444054	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17458549	0.87[EUR][1000 genomes]
rs17458808	0.87[EUR][1000 genomes]
rs17461575	0.94[EUR][1000 genomes]
rs17461664	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17461692	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17465610	0.94[EUR][1000 genomes]
rs17465946	0.94[EUR][1000 genomes]
rs17466016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484003	0.87[EUR][1000 genomes]
rs17484141	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17484342	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17484493	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17484541	0.81[AMR][1000 genomes]
rs2638223	0.81[EUR][1000 genomes]
rs2708460	0.81[EUR][1000 genomes]
rs28365173	0.87[EUR][1000 genomes]
rs28365229	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34567498	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36220738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3789329	0.83[AMR][1000 genomes]
rs4628750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4767965	0.94[EUR][1000 genomes]
rs4768213	0.87[EUR][1000 genomes]
rs4768226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4768228	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72547977	0.81[EUR][1000 genomes]
rs729215	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1042967	chr12:40629636-40710319	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40619600-40678400	Weak transcription	Right Ventricle	heart
2	chr12:40620800-40704200	Weak transcription	Esophagus	oesophagus
3	chr12:40622800-40708800	Weak transcription	Left Ventricle	heart
4	chr12:40630600-40686400	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr12:40640200-40680400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr12:40640600-40727400	Weak transcription	Spleen	Spleen
7	chr12:40640600-40768200	Weak transcription	Pancreas	Pancrea
8	chr12:40642200-40682400	Weak transcription	Brain Hippocampus Middle	brain
9	chr12:40656800-40746400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr12:40659400-40677800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr12:40659400-40678600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr12:40659400-40678600	Weak transcription	Ovary	ovary
13	chr12:40659400-40682200	Weak transcription	Brain Anterior Caudate	brain
14	chr12:40659400-40686400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr12:40659600-40680000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr12:40659600-40680200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr12:40659600-40694600	Weak transcription	Psoas Muscle	Psoas
18	chr12:40659600-40711200	Weak transcription	Aorta	Aorta
19	chr12:40661000-40683400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr12:40661600-40683600	Weak transcription	Colon Smooth Muscle	Colon
21	chr12:40661600-40696400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr12:40667400-40678400	Weak transcription	Fetal Kidney	kidney
23	chr12:40670400-40684000	Weak transcription	Brain Angular Gyrus	brain
24	chr12:40670800-40683600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:40671200-40681600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr12:40672800-40681000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr12:40673400-40713400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr12:40674400-40760400	Weak transcription	Lung	lung
29	chr12:40676000-40684600	Strong transcription	Primary B cells from cord blood	blood
30	chr12:40676400-40683600	Strong transcription	Primary B cells from peripheral blood	blood
31	chr12:40677000-40679200	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr12:40677000-40712200	Weak transcription	Fetal Muscle Leg	muscle
33	chr12:40677200-40682400	Strong transcription	Adipose Nuclei	Adipose
34	chr12:40677400-40678400	Weak transcription	A549	lung
35	chr12:40677400-40683400	Strong transcription	Liver	Liver

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