Variant report

Variant	rs17445798
Chromosome Location	chr18:25566390-25566391
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11083240	1.00[CEU][hapmap]
rs17467983	1.00[YRI][hapmap]
rs17468047	1.00[CEU][hapmap]
rs17468075	1.00[CEU][hapmap]
rs17468818	1.00[CEU][hapmap]
rs17469343	1.00[CEU][hapmap]
rs17493493	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2077362	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62103082	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	esv2760473	chr18:25386088-25571466	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25531200-25593600	Weak transcription	Fetal Kidney	kidney
2	chr18:25536400-25578200	Weak transcription	Fetal Brain Male	brain
3	chr18:25536800-25574200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr18:25540800-25576400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:25542800-25574400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr18:25544400-25572400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr18:25545600-25588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr18:25548800-25574600	Strong transcription	NH-A	brain
9	chr18:25549400-25574000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25549600-25572000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr18:25553000-25593600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:25554400-25571000	Strong transcription	Osteobl	bone
13	chr18:25555000-25571600	Weak transcription	HSMMtube	muscle
14	chr18:25555600-25574200	Weak transcription	Brain Anterior Caudate	brain
15	chr18:25556200-25574600	Weak transcription	Brain Angular Gyrus	brain
16	chr18:25556200-25586800	Weak transcription	Spleen	Spleen
17	chr18:25556200-25592800	Weak transcription	Aorta	Aorta
18	chr18:25556200-25595800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr18:25556400-25569600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr18:25556400-25576400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:25556400-25584600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr18:25557200-25575000	Weak transcription	Gastric	stomach
23	chr18:25558000-25571200	Weak transcription	Fetal Intestine Large	intestine
24	chr18:25558800-25583600	Weak transcription	Right Ventricle	heart
25	chr18:25559400-25574400	Strong transcription	Liver	Liver
26	chr18:25561800-25567600	Strong transcription	Fetal Brain Female	brain
27	chr18:25561800-25574000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:25562800-25574000	Strong transcription	HSMM	muscle
29	chr18:25563200-25566400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr18:25563200-25568400	Strong transcription	Left Ventricle	heart
31	chr18:25564000-25566400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr18:25564400-25567200	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr18:25564600-25566400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr18:25564600-25566400	Genic enhancers	HUES6 Cell Line	embryonic stem cell
35	chr18:25564800-25566600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr18:25564800-25591400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr18:25565000-25568000	Weak transcription	Dnd41	blood
38	chr18:25565000-25571000	Weak transcription	Fetal Heart	heart
39	chr18:25565000-25592800	Weak transcription	A549	lung
40	chr18:25565200-25568000	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr18:25565200-25572400	Weak transcription	Brain Hippocampus Middle	brain
42	chr18:25565200-25580000	Weak transcription	Ovary	ovary
43	chr18:25565200-25591800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr18:25565400-25566400	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr18:25565400-25567000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr18:25565400-25572400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr18:25565600-25566400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr18:25565600-25572600	Weak transcription	Brain Substantia Nigra	brain
49	chr18:25565600-25572600	Weak transcription	HUVEC	blood vessel
50	chr18:25566000-25566400	Enhancers	H9 Cell Line	embryonic stem cell

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