Variant report

Variant	rs17468818
Chromosome Location	chr18:25668405-25668406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11083240	1.00[CEU][hapmap]
rs17445798	1.00[CEU][hapmap]
rs17446078	1.00[AFR][1000 genomes]
rs17468047	1.00[CEU][hapmap]
rs17468075	1.00[CEU][hapmap]
rs17469343	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs17493493	1.00[CEU][hapmap]
rs2077362	1.00[CEU][hapmap]
rs2289664	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25655800-25690800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:25662800-25670000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:25665600-25669800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25665600-25671800	Weak transcription	Left Ventricle	heart
5	chr18:25666400-25668800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25666400-25671000	Enhancers	HepG2	liver
7	chr18:25666800-25668600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr18:25667200-25668800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr18:25667400-25668800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr18:25667400-25668800	Enhancers	Brain Angular Gyrus	brain
11	chr18:25667400-25668800	Enhancers	Brain Substantia Nigra	brain
12	chr18:25667400-25669000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr18:25667400-25669000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr18:25667400-25669000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr18:25667400-25669000	Enhancers	Fetal Brain Male	brain
16	chr18:25667400-25670400	Weak transcription	Gastric	stomach
17	chr18:25667400-25671200	Enhancers	Liver	Liver
18	chr18:25667400-25672400	Enhancers	Fetal Heart	heart
19	chr18:25667600-25668600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr18:25667600-25668600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr18:25667600-25668600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr18:25667600-25669000	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr18:25667600-25669000	Enhancers	NH-A	brain
24	chr18:25667600-25669200	Enhancers	Brain Cingulate Gyrus	brain
25	chr18:25667600-25669800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr18:25667600-25669800	Weak transcription	Fetal Intestine Small	intestine
27	chr18:25667600-25670200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:25667600-25670400	Enhancers	Brain Germinal Matrix	brain
29	chr18:25667600-25670400	Weak transcription	Right Atrium	heart
30	chr18:25667600-25672200	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr18:25667800-25668600	Enhancers	A549	lung
32	chr18:25668000-25668800	Enhancers	Osteobl	bone
33	chr18:25668000-25669400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
34	chr18:25668000-25671400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr18:25668000-25680200	Weak transcription	HSMM	muscle
36	chr18:25668200-25668800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr18:25668200-25669800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr18:25668200-25669800	Enhancers	Fetal Brain Female	brain
39	chr18:25668200-25670600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr18:25668200-25688000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr18:25668400-25668600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
42	chr18:25668400-25668600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr18:25668400-25668600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr18:25668400-25668800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr18:25668400-25668800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr18:25668400-25668800	Enhancers	Right Ventricle	heart
47	chr18:25668400-25670800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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