Variant report

Variant	rs17446036
Chromosome Location	chr18:25625030-25625031
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12955211	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1662731	1.00[CHB][hapmap]
rs17445819	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17445833	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs17445840	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17445973	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17446064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446134	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17446162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446323	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468226	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17468268	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17468324	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17468469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2298574	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2586577	1.00[CHB][hapmap]
rs28365282	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs28365284	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs28365300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3786420	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs505314	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6508523	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7233001	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7238774	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs8095618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9646566	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25617000-25628800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr18:25617400-25625200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:25618400-25631600	Weak transcription	Fetal Brain Male	brain
4	chr18:25619400-25625400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:25619600-25625200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr18:25620200-25625400	Weak transcription	Right Atrium	heart
7	chr18:25620400-25625200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr18:25620400-25625400	Weak transcription	Brain Substantia Nigra	brain
9	chr18:25620400-25627400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25620400-25627600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:25620400-25629200	Weak transcription	Left Ventricle	heart
12	chr18:25620600-25625200	Weak transcription	Brain Angular Gyrus	brain
13	chr18:25620600-25625400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:25620600-25625400	Weak transcription	HUVEC	blood vessel
15	chr18:25621200-25625200	Weak transcription	A549	lung
16	chr18:25621200-25625400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:25621600-25628200	Weak transcription	Fetal Brain Female	brain
18	chr18:25621800-25625200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr18:25621800-25625200	Weak transcription	Brain Germinal Matrix	brain
20	chr18:25621800-25628200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr18:25622000-25625400	Weak transcription	HSMM	muscle
22	chr18:25622400-25625200	Weak transcription	Osteobl	bone
23	chr18:25623600-25625200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr18:25623600-25627600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr18:25623600-25627600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr18:25624200-25625800	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr18:25624400-25627400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr18:25624600-25626000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr18:25624800-25625200	Weak transcription	Liver	Liver
30	chr18:25624800-25625600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr18:25624800-25626200	Enhancers	Brain Anterior Caudate	brain
32	chr18:25624800-25627400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr18:25624800-25627400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr18:25625000-25625200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr18:25625000-25625400	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr18:25625000-25625600	Enhancers	Brain Hippocampus Middle	brain
37	chr18:25625000-25625600	Enhancers	NH-A	brain
38	chr18:25625000-25625800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr18:25625000-25625800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr18:25625000-25625800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr18:25625000-25626000	Enhancers	H1 Cell Line	embryonic stem cell
42	chr18:25625000-25626000	Enhancers	H9 Cell Line	embryonic stem cell
43	chr18:25625000-25626200	Enhancers	Fetal Heart	heart
44	chr18:25625000-25626600	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr18:25625000-25627400	Enhancers	HUES64 Cell Line	embryonic stem cell

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