Variant report

Variant	rs17446218
Chromosome Location	chr18:25645782-25645783
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs12955211	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1662731	1.00[CHB][hapmap]
rs17445819	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17445833	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs17445840	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17445973	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17446036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17446134	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17446162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446323	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17446435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468226	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17468268	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs17468324	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs17468469	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17468601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468755	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2298574	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs2586577	1.00[CHB][hapmap]
rs28365282	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs28365284	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs28365300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3786420	1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs505314	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6508523	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7233001	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7238774	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]
rs8095618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9646566	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
2	chr18:25642400-25646800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr18:25642400-25646800	Enhancers	HSMM	muscle
4	chr18:25642600-25646200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr18:25642600-25646800	Enhancers	Fetal Heart	heart
6	chr18:25642800-25646200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:25642800-25647400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr18:25643000-25655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:25643200-25645800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr18:25643200-25646000	Enhancers	Brain Hippocampus Middle	brain
11	chr18:25643200-25646600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:25643200-25646800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr18:25643200-25647400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr18:25643800-25646800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr18:25643800-25651200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr18:25643800-25653400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr18:25644000-25645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr18:25644000-25655200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr18:25644200-25646000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr18:25644200-25646200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr18:25644200-25646600	Enhancers	Brain Germinal Matrix	brain
22	chr18:25644200-25647400	Weak transcription	Fetal Lung	lung
23	chr18:25644600-25646000	Enhancers	Brain Substantia Nigra	brain
24	chr18:25644600-25646000	Enhancers	HepG2	liver
25	chr18:25644600-25646600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr18:25644600-25646800	Enhancers	HUVEC	blood vessel
27	chr18:25644800-25645800	Enhancers	Brain Angular Gyrus	brain
28	chr18:25644800-25646000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:25644800-25646000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr18:25644800-25646200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr18:25644800-25646200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr18:25644800-25646600	Enhancers	Brain Anterior Caudate	brain
33	chr18:25644800-25646800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr18:25645000-25645800	Weak transcription	Aorta	Aorta
35	chr18:25645000-25646000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr18:25645000-25646000	Enhancers	Brain Cingulate Gyrus	brain
37	chr18:25645000-25647000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr18:25645000-25649600	Weak transcription	Left Ventricle	heart
39	chr18:25645000-25651200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr18:25645000-25658200	Weak transcription	Fetal Brain Female	brain
41	chr18:25645200-25645800	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr18:25645200-25646000	Enhancers	NHLF	lung
43	chr18:25645200-25646200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr18:25645200-25649600	Weak transcription	Right Ventricle	heart
45	chr18:25645400-25645800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr18:25645400-25645800	Active TSS	A549	lung
47	chr18:25645400-25646600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr18:25645400-25646800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr18:25645400-25646800	Enhancers	Osteobl	bone
50	chr18:25645400-25647000	Enhancers	NH-A	brain

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