Variant report
| Variant | rs17447922 |
|---|---|
| Chromosome Location | chr4:21182178-21182179 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10516374 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10938827 | 0.82[JPT][hapmap] |
| rs10938837 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs11730710 | 0.84[ASN][1000 genomes] |
| rs1364832 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1364833 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1364838 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1364839 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs17445800 | 1.00[JPT][hapmap] |
| rs17446667 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs17447985 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17448106 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17448392 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17505566 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs17506080 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs17506108 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
| rs17513252 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs17636197 | 0.82[JPT][hapmap] |
| rs17637027 | 0.82[JPT][hapmap] |
| rs2113966 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2162080 | 0.92[ASN][1000 genomes] |
| rs2163933 | 0.88[JPT][hapmap] |
| rs28721307 | 0.96[ASN][1000 genomes] |
| rs2874892 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs3864185 | 0.91[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56052027 | 0.89[ASN][1000 genomes] |
| rs6835991 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs720852 | 0.82[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014941 | chr4:20611726-21345226 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv537053 | chr4:20611726-21345226 | ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv4264 | chr4:21138131-21199262 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:21181600-21182600 | Weak transcription | Fetal Lung | lung |
