Variant report

Variant	rs17448106
Chromosome Location	chr4:21186330-21186331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:21186139..21187069-chr4:21470759..21471732,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10516374	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10938827	0.82[JPT][hapmap]
rs10938837	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11730710	0.86[ASN][1000 genomes]
rs1364832	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1364833	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1364838	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1364839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17445800	1.00[JPT][hapmap]
rs17446667	0.89[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17447922	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17447985	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17448392	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17505566	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs17506080	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17506108	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17513252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17636197	0.82[JPT][hapmap]
rs17637027	0.82[JPT][hapmap]
rs2113966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2162080	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163933	0.88[JPT][hapmap]
rs28721307	0.98[ASN][1000 genomes]
rs2874892	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3864185	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56052027	0.91[ASN][1000 genomes]
rs6835991	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs720852	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014941	chr4:20611726-21345226	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537053	chr4:20611726-21345226	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv4264	chr4:21138131-21199262	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21185400-21186400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:21186000-21186600	Enhancers	HUES48 Cell Line	embryonic stem cell

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