Variant report

Variant	rs174524
Chromosome Location	chr5:61254964-61254965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1020387	0.93[EUR][1000 genomes]
rs1374005	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1374007	0.90[EUR][1000 genomes]
rs1374008	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs171923	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1838716	0.93[EUR][1000 genomes]
rs263664	0.85[EUR][1000 genomes]
rs263665	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7726480	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61250200-61255800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:61250400-61259600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:61250800-61259200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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