Variant report

Variant	rs1838716
Chromosome Location	chr5:61264043-61264044
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1020387	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374005	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374007	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1374008	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1445886	0.82[ASN][1000 genomes]
rs171923	0.91[EUR][1000 genomes]
rs174524	0.93[EUR][1000 genomes]
rs1862587	0.80[EUR][1000 genomes]
rs2100035	0.80[EUR][1000 genomes]
rs263665	0.93[EUR][1000 genomes]
rs4700454	0.82[EUR][1000 genomes]
rs7726251	0.81[EUR][1000 genomes]
rs7726480	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734412	0.82[ASN][1000 genomes]
rs906691	1.00[ASN][1000 genomes]
rs9291745	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881724	chr5:61257159-61318424	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61260600-61264800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:61260600-61265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:61260600-61265400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:61260800-61265200	Weak transcription	NHDF-Ad	bronchial
5	chr5:61261200-61264400	Weak transcription	HMEC	breast
6	chr5:61261200-61264600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:61261200-61265000	Weak transcription	HSMMtube	muscle
8	chr5:61261600-61264800	Weak transcription	HSMM	muscle
9	chr5:61261600-61264800	Weak transcription	NHEK	skin
10	chr5:61263000-61264600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:61263000-61264800	Weak transcription	NH-A	brain
12	chr5:61263000-61265800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:61263200-61264600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:61263200-61265400	Weak transcription	NHLF	lung
15	chr5:61264000-61264400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links