Variant report

Variant	rs17456970
Chromosome Location	chr2:11169028-11169029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11883480	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11885604	1.00[ASN][1000 genomes]
rs11892303	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17366517	1.00[CHB][hapmap]
rs56074519	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781460	1.00[ASN][1000 genomes]
rs72783428	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783442	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72783443	1.00[ASN][1000 genomes]
rs72783467	1.00[ASN][1000 genomes]
rs7603298	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17456970	ODC1	cis	cerebellum	SCAN
rs17456970	MBOAT2	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11164800-11171200	Weak transcription	Pancreas	Pancrea
2	chr2:11165000-11170000	Weak transcription	Fetal Lung	lung
3	chr2:11168800-11170200	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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