Variant report

Variant	rs72781460
Chromosome Location	chr2:11056609-11056610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11054784..11057728-chr2:11061728..11064590,3	MCF-7	breast:
2	chr2:11054478..11056999-chr2:11265255..11267127,2	MCF-7	breast:
3	chr2:11056290..11057062-chr2:11066095..11066758,2	K562	blood:
4	chr2:11051947..11053779-chr2:11056308..11059546,3	MCF-7	breast:
5	chr2:11055046..11056818-chr2:11058961..11061152,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162975	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11883480	1.00[ASN][1000 genomes]
rs11885604	1.00[ASN][1000 genomes]
rs11892303	1.00[ASN][1000 genomes]
rs17456970	1.00[ASN][1000 genomes]
rs56074519	1.00[ASN][1000 genomes]
rs72783428	1.00[ASN][1000 genomes]
rs72783442	1.00[ASN][1000 genomes]
rs72783443	1.00[ASN][1000 genomes]
rs72783467	1.00[ASN][1000 genomes]
rs7603298	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580969	chr2:11033567-11081645	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv873662	chr2:11035430-11061156	Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv521177	chr2:11040146-11066699	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv817618	chr2:11055298-11075754	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv469438	chr2:11055298-11085744	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
7	nsv580970	chr2:11055298-11085744	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11053600-11058200	Enhancers	Fetal Brain Male	brain
2	chr2:11053600-11058800	Weak transcription	Pancreas	Pancrea
3	chr2:11053800-11058800	Weak transcription	Gastric	stomach
4	chr2:11054200-11063600	Enhancers	Fetal Thymus	thymus
5	chr2:11054400-11072400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:11054600-11058800	Weak transcription	Hela-S3	cervix
7	chr2:11054600-11059000	Weak transcription	Right Ventricle	heart
8	chr2:11054800-11058800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:11055200-11069800	Weak transcription	A549	lung
10	chr2:11056000-11056800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:11056000-11059400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr2:11056200-11058800	Weak transcription	Brain Hippocampus Middle	brain
13	chr2:11056200-11060200	Weak transcription	Brain Angular Gyrus	brain
14	chr2:11056400-11057600	Active TSS	Fetal Brain Female	brain
15	chr2:11056400-11058800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:11056400-11059000	Weak transcription	Fetal Lung	lung
17	chr2:11056400-11059400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:11056400-11059600	Weak transcription	Brain Germinal Matrix	brain
19	chr2:11056400-11060200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:11056600-11057000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr2:11056600-11058400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr2:11056600-11058800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr2:11056600-11058800	Weak transcription	Brain Anterior Caudate	brain
24	chr2:11056600-11059600	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:11056600-11059800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:11056600-11060000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr2:11056600-11060000	Genic enhancers	Cortex derived primary cultured neurospheres	brain

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