Variant report

Variant	rs17458279
Chromosome Location	chr1:56751151-56751152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10888961	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11206765	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12075857	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12075995	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12076123	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12077346	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12077564	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12081440	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12082680	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12562857	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12565829	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12567619	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17113689	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17424500	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17424899	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17425099	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17425772	0.82[ASN][1000 genomes]
rs17459027	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2000141	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2000142	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2153667	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2404528	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3992066	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55633488	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55652225	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55742346	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56022955	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56237067	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61379230	0.82[ASN][1000 genomes]
rs72660403	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72660452	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72660457	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72677472	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72677474	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72677478	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56748400-56759600	Weak transcription	Aorta	Aorta
3	chr1:56750000-56752200	Enhancers	HepG2	liver
4	chr1:56750000-56753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56750200-56752000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56750200-56752000	Enhancers	HSMMtube	muscle
7	chr1:56750200-56752200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56750200-56752200	Enhancers	Left Ventricle	heart
9	chr1:56750200-56752600	Enhancers	Fetal Muscle Leg	muscle
10	chr1:56750200-56752800	Enhancers	Adipose Nuclei	Adipose
11	chr1:56750200-56752800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:56750200-56753000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:56750400-56751200	Weak transcription	Right Atrium	heart
14	chr1:56750600-56751200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:56750600-56751200	Enhancers	Fetal Lung	lung
16	chr1:56750600-56751400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr1:56750800-56751400	Enhancers	Colon Smooth Muscle	Colon
18	chr1:56750800-56751400	Flanking Active TSS	A549	lung
19	chr1:56750800-56752000	Enhancers	HUVEC	blood vessel
20	chr1:56751000-56751800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:56751000-56751800	Enhancers	Lung	lung
22	chr1:56751000-56752000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:56751000-56752000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:56751000-56752000	Enhancers	Fetal Stomach	stomach
25	chr1:56751000-56752200	Enhancers	Dnd41	blood
26	chr1:56751000-56752800	Enhancers	Psoas Muscle	Psoas
27	chr1:56751000-56753000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:56751000-56753200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:56751000-56753600	Enhancers	Placenta	Placenta
30	chr1:56751000-56753600	Enhancers	Placenta Amnion	Placenta Amnion

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