Variant report

Variant	rs3992066
Chromosome Location	chr1:56725376-56725377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56724876..56727299-chr1:56729656..56732190,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10437059	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10888961	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11206765	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075857	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12075995	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12076123	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077346	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077564	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081440	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082680	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12562857	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12565829	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12567619	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467337	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1467338	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1581995	0.81[AMR][1000 genomes]
rs17362438	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17362459	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17362494	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17458279	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2000141	0.81[EUR][1000 genomes]
rs2153667	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55633488	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55652225	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55742346	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886189	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56022955	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237067	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56907491	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60773549	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72660403	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72675578	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72675594	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675597	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675598	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72675599	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72677407	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72677430	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72677472	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677474	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677478	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928389	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56720800-56725400	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:56721800-56730000	Weak transcription	Ovary	ovary
3	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:56723600-56725600	Enhancers	Left Ventricle	heart
5	chr1:56724200-56726000	Weak transcription	Placenta	Placenta
6	chr1:56724400-56725600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:56724600-56725400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:56725000-56725600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr1:56725000-56725600	Enhancers	Fetal Heart	heart
10	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas

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