Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10888961	0.84[AMR][1000 genomes]
rs11206765	0.84[AMR][1000 genomes]
rs11206773	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12075857	0.84[AMR][1000 genomes]
rs12075995	0.84[AMR][1000 genomes]
rs12076123	0.84[AMR][1000 genomes]
rs12077346	0.84[AMR][1000 genomes]
rs12077564	0.84[AMR][1000 genomes]
rs12081440	0.84[AMR][1000 genomes]
rs12082680	0.84[AMR][1000 genomes]
rs12562857	0.81[AMR][1000 genomes]
rs12565829	0.81[AMR][1000 genomes]
rs12567619	0.84[AMR][1000 genomes]
rs1935050	0.86[CHB][hapmap]
rs2153667	0.81[AMR][1000 genomes]
rs2792796	0.86[ASN][1000 genomes]
rs2793662	0.83[CHB][hapmap]
rs3992066	0.81[AMR][1000 genomes]
rs55633488	0.84[AMR][1000 genomes]
rs55652225	0.84[AMR][1000 genomes]
rs55742346	0.84[AMR][1000 genomes]
rs56022955	0.84[AMR][1000 genomes]
rs56237067	0.81[AMR][1000 genomes]
rs72660403	0.84[AMR][1000 genomes]
rs72677472	0.84[AMR][1000 genomes]
rs72677474	0.84[AMR][1000 genomes]
rs72677478	0.84[AMR][1000 genomes]
rs947007	0.87[CHB][hapmap]
rs947008	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56743600-56745200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: