Variant report

Variant	rs947007
Chromosome Location	chr1:56727938-56727939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1341341	0.94[ASN][1000 genomes]
rs1935050	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2792794	0.80[JPT][hapmap]
rs2792796	0.84[ASN][1000 genomes]
rs2793661	0.80[JPT][hapmap]
rs2793662	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793664	0.80[GIH][hapmap];0.90[JPT][hapmap]
rs4927309	0.95[ASN][1000 genomes]
rs947008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs947007	PRKCB	trans	lymphoblastoid	seeQTL
rs947007	PARS2	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56726400-56732400	Weak transcription	Left Ventricle	heart
4	chr1:56726600-56733400	Weak transcription	Placenta	Placenta
5	chr1:56727200-56728000	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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