Variant report

Variant	rs2793662
Chromosome Location	chr1:56725516-56725517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1341341	0.91[ASN][1000 genomes]
rs1935050	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2792794	0.86[JPT][hapmap]
rs2792796	0.81[ASN][1000 genomes]
rs2793661	0.86[JPT][hapmap]
rs2793664	0.86[JPT][hapmap]
rs4927309	0.92[ASN][1000 genomes]
rs947007	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs947008	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2793662	PARS2	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56723600-56725600	Enhancers	Left Ventricle	heart
4	chr1:56724200-56726000	Weak transcription	Placenta	Placenta
5	chr1:56724400-56725600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:56725000-56725600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:56725000-56725600	Enhancers	Fetal Heart	heart
8	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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