Variant report

Variant	rs1935050
Chromosome Location	chr1:56725826-56725827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56724876..56727299-chr1:56729656..56732190,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1149639	0.82[AMR][1000 genomes]
rs1149647	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1230037	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1236961	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341341	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1557060	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1557061	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1724988	0.82[AMR][1000 genomes]
rs2000147	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2096085	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2404524	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2792796	0.83[ASN][1000 genomes]
rs2793661	0.86[JPT][hapmap]
rs2793662	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2793664	0.86[JPT][hapmap]
rs4927309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs697583	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706375	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs706376	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs706383	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706395	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7538742	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778120	0.83[AMR][1000 genomes]
rs778122	0.83[AMR][1000 genomes]
rs778127	0.81[AMR][1000 genomes]
rs778382	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778397	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778410	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778425	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778426	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778428	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778430	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778431	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs947007	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs947008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
3	chr1:56724200-56726000	Weak transcription	Placenta	Placenta
4	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas
5	chr1:56725600-56726000	Weak transcription	Left Ventricle	heart

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