Variant report

Variant	rs778122
Chromosome Location	chr1:56619576-56619577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11206731	0.85[ASN][1000 genomes]
rs11206735	0.86[ASN][1000 genomes]
rs1149639	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1149641	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1149647	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12025982	0.86[ASN][1000 genomes]
rs12041298	0.83[ASN][1000 genomes]
rs12043247	0.84[ASN][1000 genomes]
rs1230037	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1235423	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1236961	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1331855	0.86[ASN][1000 genomes]
rs1341341	0.83[AMR][1000 genomes]
rs1412217	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1557060	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1557061	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1724988	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1935050	0.83[AMR][1000 genomes]
rs2000147	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2096085	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2404524	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4927309	0.83[AMR][1000 genomes]
rs6670027	0.86[ASN][1000 genomes]
rs6675451	0.86[ASN][1000 genomes]
rs697583	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706375	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706376	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs706383	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706395	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7538742	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7551693	0.85[ASN][1000 genomes]
rs778120	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778127	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778382	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778397	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778410	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778425	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778426	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778428	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778430	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778431	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs947008	0.83[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56605800-56622600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56618600-56619600	Enhancers	HUVEC	blood vessel
3	chr1:56619200-56622400	Weak transcription	Fetal Thymus	thymus
4	chr1:56619400-56622600	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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