Variant report

Variant	rs1236961
Chromosome Location	chr1:56673585-56673586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1149639	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149641	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1149647	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1149649	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1230037	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235423	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341341	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1412217	0.86[AMR][1000 genomes]
rs1557060	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1557061	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1724988	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1935050	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000147	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2096085	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2211292	0.82[EUR][1000 genomes]
rs2404524	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4927309	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs697583	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706375	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs706376	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706383	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706395	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7538742	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778120	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778122	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778127	0.91[AMR][1000 genomes]
rs778382	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778397	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778410	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778423	0.86[AFR][1000 genomes]
rs778425	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778426	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778428	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778430	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778431	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947008	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945964	chr1:56673295-56677420	Weak transcription ZNF genes & repeats Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1236961	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56668200-56678000	Weak transcription	Psoas Muscle	Psoas
2	chr1:56673200-56673800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56673400-56674000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle

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