Variant report

Variant	rs778425
Chromosome Location	chr1:56658709-56658710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1149639	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1149641	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1149647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1149649	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1230037	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1235423	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1236961	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341341	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1412217	0.87[AMR][1000 genomes]
rs1557060	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1557061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1724988	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1935050	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2000147	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2096085	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2211292	0.82[EUR][1000 genomes]
rs2404524	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4927309	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs697583	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706375	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs706376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706383	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706395	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7538742	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778120	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778122	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778127	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778382	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778397	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778410	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778423	0.87[AFR][1000 genomes]
rs778426	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778430	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
3	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
7	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
8	chr1:56656600-56658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:56657000-56659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr1:56657000-56661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr1:56657000-56662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:56657000-56662200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:56657000-56662200	Weak transcription	Adipose Nuclei	Adipose
15	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:56657600-56660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:56657600-56661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:56657800-56663000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:56657800-56663200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:56657800-56665800	Weak transcription	Fetal Kidney	kidney
22	chr1:56658000-56659800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56658000-56660400	Weak transcription	Osteobl	bone
24	chr1:56658000-56662200	Weak transcription	Fetal Muscle Leg	muscle
25	chr1:56658200-56659400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:56658200-56659400	Weak transcription	NHDF-Ad	bronchial
27	chr1:56658200-56665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:56658400-56659400	Weak transcription	Psoas Muscle	Psoas
29	chr1:56658400-56659600	Weak transcription	HepG2	liver
30	chr1:56658400-56659800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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