Variant report

Variant	rs778423
Chromosome Location	chr1:56656812-56656813
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1149646	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1149647	0.87[AFR][1000 genomes]
rs1149648	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1149649	0.86[AFR][1000 genomes]
rs1149651	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1230036	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1234587	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1236961	0.86[AFR][1000 genomes]
rs12564025	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1417770	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2246574	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2487318	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2792773	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4927308	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs697583	0.86[AFR][1000 genomes]
rs706356	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs706358	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706376	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs706383	0.85[AFR][1000 genomes]
rs706389	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs706392	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs706395	0.86[AFR][1000 genomes]
rs706396	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs706397	0.94[ASN][1000 genomes]
rs706398	0.94[ASN][1000 genomes]
rs706399	0.94[ASN][1000 genomes]
rs778129	0.94[ASN][1000 genomes]
rs778130	0.94[ASN][1000 genomes]
rs778384	0.94[ASN][1000 genomes]
rs778385	0.91[ASN][1000 genomes]
rs778388	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778390	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778391	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778392	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778393	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778394	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778396	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778399	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778400	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778401	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778402	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778403	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778404	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778405	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778409	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778411	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778415	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778416	0.95[ASN][1000 genomes]
rs778417	0.94[ASN][1000 genomes]
rs778418	0.95[ASN][1000 genomes]
rs778419	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778421	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778425	0.87[AFR][1000 genomes]
rs778427	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778428	0.87[AFR][1000 genomes]
rs778430	0.86[AFR][1000 genomes]
rs778431	0.86[AFR][1000 genomes]
rs801273	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs813574	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56653800-56657000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56653800-56657000	Enhancers	Adipose Nuclei	Adipose
6	chr1:56653800-56657000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
8	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
9	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
10	chr1:56653800-56669400	Enhancers	Placenta	Placenta
11	chr1:56654000-56657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:56654200-56657000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr1:56654400-56657400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:56654400-56657600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:56654600-56657000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:56655000-56657600	Flanking Active TSS	HepG2	liver
18	chr1:56655000-56658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
20	chr1:56655600-56657400	Weak transcription	Ovary	ovary
21	chr1:56655800-56658200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:56656000-56657800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:56656000-56658000	Enhancers	Osteobl	bone
24	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:56656200-56657400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:56656200-56657400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:56656200-56657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
31	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
32	chr1:56656600-56657000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:56656600-56657200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:56656600-56658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:56656800-56657200	Flanking Active TSS	A549	lung
36	chr1:56656800-56657800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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