Variant report

Variant	rs2487318
Chromosome Location	chr1:56702241-56702242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11206759	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11206760	0.83[ASN][1000 genomes]
rs11206762	0.87[ASN][1000 genomes]
rs1149646	0.81[EUR][1000 genomes]
rs1149648	0.81[EUR][1000 genomes]
rs1149651	0.83[EUR][1000 genomes]
rs12118289	0.80[AFR][1000 genomes]
rs12119413	0.89[AFR][1000 genomes]
rs12126843	0.82[AFR][1000 genomes]
rs12142085	0.83[AFR][1000 genomes]
rs1230036	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1234587	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12564025	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1417770	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2246574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2792773	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4927308	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6694549	0.89[AFR][1000 genomes]
rs706356	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706358	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs706389	0.81[EUR][1000 genomes]
rs706392	0.80[EUR][1000 genomes]
rs706396	0.81[EUR][1000 genomes]
rs778388	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs778390	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778391	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778392	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778393	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778394	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778396	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778399	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778400	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778401	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778402	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778403	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778404	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778405	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778406	0.83[ASN][1000 genomes]
rs778407	0.98[ASN][1000 genomes]
rs778409	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778411	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778412	0.98[ASN][1000 genomes]
rs778413	0.95[ASN][1000 genomes]
rs778415	0.82[EUR][1000 genomes]
rs778419	0.81[EUR][1000 genomes]
rs778421	0.80[EUR][1000 genomes]
rs778423	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778427	0.81[EUR][1000 genomes]
rs801273	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs813574	0.81[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56701200-56702800	Enhancers	HepG2	liver
3	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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