Variant report

Variant	rs12118289
Chromosome Location	chr1:56695268-56695269
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10888959	0.83[AMR][1000 genomes]
rs11206756	0.83[AMR][1000 genomes]
rs11206759	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11206760	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12119318	0.80[AMR][1000 genomes]
rs12119413	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12126843	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12136560	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12140564	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12142085	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12143116	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12144574	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1341337	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1341339	0.86[CEU][hapmap]
rs1417768	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1417771	0.86[CEU][hapmap]
rs2246574	0.80[AFR][1000 genomes]
rs2487318	0.80[AFR][1000 genomes]
rs2792773	0.81[AFR][1000 genomes]
rs2792797	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4927308	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs57193460	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6588611	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6588612	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6673309	0.86[CEU][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6685185	0.87[AMR][1000 genomes]
rs6687944	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs6694549	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706356	0.81[ASN][1000 genomes]
rs706358	0.83[ASN][1000 genomes]
rs72675591	0.83[AMR][1000 genomes]
rs72677469	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72677477	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7512969	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548377	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7554047	0.83[AMR][1000 genomes]
rs778388	0.82[ASN][1000 genomes]
rs778390	0.83[ASN][1000 genomes]
rs778391	0.83[ASN][1000 genomes]
rs778392	0.82[ASN][1000 genomes]
rs778393	0.81[ASN][1000 genomes]
rs778394	0.82[ASN][1000 genomes]
rs778406	0.95[ASN][1000 genomes]
rs801273	0.80[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56693600-56696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56693800-56695400	Enhancers	Fetal Kidney	kidney
3	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
4	chr1:56694800-56695400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56694800-56695400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:56694800-56695600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr1:56694800-56696000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas

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