Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11206759	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11206760	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12118289	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12119413	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12126843	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12136560	0.83[EUR][1000 genomes]
rs12142085	0.84[EUR][1000 genomes]
rs12564025	0.83[AFR][1000 genomes]
rs1341337	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1341339	0.86[CEU][hapmap];0.86[MEX][hapmap];0.90[AMR][1000 genomes]
rs1341358	0.91[AMR][1000 genomes]
rs1417768	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1417771	0.86[CEU][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes]
rs2792798	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs2792799	0.91[AMR][1000 genomes]
rs2792800	0.90[AMR][1000 genomes]
rs57193460	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6588611	0.80[EUR][1000 genomes]
rs6673309	0.86[CEU][hapmap]
rs6694549	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72677469	0.80[AMR][1000 genomes]
rs7512969	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778406	0.90[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2792797	FGGY	cis	parietal	SCAN
rs2792797	C8B	cis	parietal	SCAN
rs2792797	PODN	cis	cerebellum	SCAN
rs2792797	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56714200-56715800	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:56714200-56715800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:56714200-56717000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:56714400-56715800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:56714600-56716000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr1:56714600-56716600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr1:56714600-56717400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:56714800-56716000	Enhancers	Adipose Nuclei	Adipose
11	chr1:56715000-56716400	Enhancers	Primary B cells from cord blood	blood
12	chr1:56715400-56716600	Enhancers	Colon Smooth Muscle	Colon
13	chr1:56715400-56716800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:56715400-56717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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