Variant report

Variant	rs1417771
Chromosome Location	chr1:56727559-56727560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10888959	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206756	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12117416	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118298	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118755	0.90[EUR][1000 genomes]
rs12119318	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121243	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129181	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132862	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12136560	0.82[EUR][1000 genomes]
rs12140232	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12140564	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140921	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12142085	0.85[EUR][1000 genomes]
rs12143116	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12144574	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341337	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1341339	1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1341358	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1417768	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17423986	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792797	0.87[AMR][1000 genomes]
rs2792798	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792799	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792800	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57193460	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6588611	0.80[EUR][1000 genomes]
rs6588612	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6673309	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685185	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687944	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72675587	0.90[EUR][1000 genomes]
rs72675591	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677469	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72677477	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512771	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512969	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548377	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7554047	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556455	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1417771	C8B	cis	parietal	SCAN
rs1417771	DMRTB1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56726400-56732400	Weak transcription	Left Ventricle	heart
4	chr1:56726600-56733400	Weak transcription	Placenta	Placenta
5	chr1:56727200-56728000	Enhancers	HepG2	liver

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