Variant report

Variant	rs7512771
Chromosome Location	chr1:56717729-56717730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56716406..56718859-chr1:56719242..56721929,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10888959	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206756	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206760	0.80[AMR][1000 genomes]
rs12117416	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118298	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118755	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12119318	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12121243	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12129181	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12132862	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12136560	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140232	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12140564	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140921	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12142085	0.84[EUR][1000 genomes]
rs12143116	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12144574	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341337	0.82[EUR][1000 genomes]
rs1341339	1.00[CEU][hapmap];1.00[CHD][hapmap];0.89[TSI][hapmap];0.96[EUR][1000 genomes]
rs1341358	0.95[EUR][1000 genomes]
rs1417768	0.83[EUR][1000 genomes]
rs1417771	1.00[CEU][hapmap];1.00[CHD][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17423986	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792798	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2792799	0.95[EUR][1000 genomes]
rs2792800	0.81[EUR][1000 genomes]
rs57193460	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6588612	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6673309	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6685185	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687944	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72675587	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72675591	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72677469	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677477	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7512969	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7548377	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7554047	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7512771	DMRTB1	cis	cerebellum	SCAN
rs7512771	C8B	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56715400-56717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:56716600-56720800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:56716600-56721000	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:56716800-56720200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56716800-56721400	Weak transcription	Left Ventricle	heart
9	chr1:56717000-56721200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:56717400-56720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:56717400-56721400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:56717600-56718000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:56717600-56718000	Enhancers	Sigmoid Colon	Sigmoid Colon

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