Variant report

Variant	rs72675587
Chromosome Location	chr1:56661392-56661393
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10888959	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206756	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12117416	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12118298	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12118755	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12119318	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12121243	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12129181	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12132862	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12136560	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12140232	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12140564	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12140921	0.83[EUR][1000 genomes]
rs12143116	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12144574	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1341339	0.90[EUR][1000 genomes]
rs1341358	0.89[EUR][1000 genomes]
rs1417771	0.90[EUR][1000 genomes]
rs17423986	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2792798	0.89[EUR][1000 genomes]
rs2792799	0.89[EUR][1000 genomes]
rs6588611	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6588612	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6673309	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6685185	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6687944	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72675591	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72677469	0.90[EUR][1000 genomes]
rs72677477	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7512771	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7548377	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7554047	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7556455	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
3	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
7	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
8	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:56657000-56661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:56657000-56662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:56657000-56662200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:56657000-56662200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:56657600-56661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:56657800-56663000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:56657800-56663200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:56657800-56665800	Weak transcription	Fetal Kidney	kidney
19	chr1:56658000-56662200	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:56658200-56665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:56659400-56662200	Enhancers	NHDF-Ad	bronchial
22	chr1:56659800-56661800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:56659800-56662200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:56659800-56662800	Weak transcription	Psoas Muscle	Psoas
25	chr1:56659800-56664200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:56660200-56662200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:56661200-56663000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:56661200-56665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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