Variant report

Variant	rs72677469
Chromosome Location	chr1:56723768-56723769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10888959	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11206756	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11206759	0.87[AMR][1000 genomes]
rs11206760	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12117416	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12118289	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12118298	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12118755	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12119318	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12119413	0.87[AMR][1000 genomes]
rs12121243	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12126843	0.86[AMR][1000 genomes]
rs12129181	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12132862	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12136560	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12140232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140564	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12140921	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12142085	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12143116	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12144574	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1341337	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1341339	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341358	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1417768	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1417771	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17423986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2792797	0.80[AMR][1000 genomes]
rs2792798	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2792799	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2792800	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57193460	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6588611	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6588612	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6673309	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6685185	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6687944	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6694549	0.87[AMR][1000 genomes]
rs72675587	0.90[EUR][1000 genomes]
rs72675591	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72677477	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7512771	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7512969	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7548377	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554047	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7556455	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56720000-56724200	Enhancers	Placenta	Placenta
2	chr1:56720600-56724000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56720800-56724000	Enhancers	Adipose Nuclei	Adipose
4	chr1:56720800-56725200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56720800-56725400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:56721200-56723800	Enhancers	Fetal Lung	lung
7	chr1:56721200-56725000	Enhancers	Psoas Muscle	Psoas
8	chr1:56721800-56723800	Enhancers	Right Ventricle	heart
9	chr1:56721800-56725000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:56721800-56730000	Weak transcription	Ovary	ovary
11	chr1:56722200-56725000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr1:56722200-56725000	Weak transcription	Fetal Heart	heart
13	chr1:56722400-56724400	Enhancers	Right Atrium	heart
14	chr1:56722600-56724400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:56722800-56724000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:56722800-56724000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:56722800-56724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:56722800-56724200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:56723000-56723800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:56723600-56723800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr1:56723600-56724400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
23	chr1:56723600-56724800	Enhancers	Fetal Thymus	thymus
24	chr1:56723600-56725000	Enhancers	Stomach Smooth Muscle	stomach
25	chr1:56723600-56725600	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links