Variant report

Variant	rs7512969
Chromosome Location	chr1:56717922-56717923
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56716406..56718859-chr1:56719242..56721929,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10888959	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1119073	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11206756	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11206759	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11206760	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12117416	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12118289	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12118298	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12119318	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12119413	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12121243	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12126843	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12129181	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12132862	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12136560	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140232	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12140564	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12140921	0.85[AMR][1000 genomes]
rs12142085	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12143116	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12144574	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1341337	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1341339	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1341358	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1412222	0.83[ASN][1000 genomes]
rs1417768	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1417771	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17113474	0.84[ASN][1000 genomes]
rs17113557	0.99[ASN][1000 genomes]
rs17423986	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792795	0.80[ASN][1000 genomes]
rs2792797	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2792798	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2792799	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2792800	0.80[AMR][1000 genomes]
rs2793660	0.80[ASN][1000 genomes]
rs2793661	0.82[CHB][hapmap];0.80[ASN][1000 genomes]
rs57193460	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58429206	0.84[ASN][1000 genomes]
rs6588611	0.81[AMR][1000 genomes]
rs6588612	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6673309	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6685185	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6687944	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6694549	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72675591	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72677469	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72677477	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7512771	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7548377	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7554047	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7556455	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:56716600-56720800	Weak transcription	Adipose Nuclei	Adipose
5	chr1:56716600-56721000	Weak transcription	Colon Smooth Muscle	Colon
6	chr1:56716800-56720200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56716800-56721400	Weak transcription	Left Ventricle	heart
8	chr1:56717000-56721200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr1:56717400-56720800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr1:56717400-56721400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:56717600-56718000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:56717600-56718000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr1:56717800-56720400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:56717800-56720800	Weak transcription	NHDF-Ad	bronchial

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