Variant report

Variant	rs2792795
Chromosome Location	chr1:56723851-56723852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1119073	0.88[CHB][hapmap]
rs11206749	0.86[EUR][1000 genomes]
rs11206750	0.85[EUR][1000 genomes]
rs12136560	0.80[ASN][1000 genomes]
rs12564025	0.97[ASN][1000 genomes]
rs1331862	0.85[EUR][1000 genomes]
rs1360504	0.83[EUR][1000 genomes]
rs1417770	0.97[ASN][1000 genomes]
rs17113557	0.81[ASN][1000 genomes]
rs1935050	0.86[JPT][hapmap]
rs2777758	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792774	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792775	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792776	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792794	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793661	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793662	0.86[JPT][hapmap]
rs2793663	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793664	0.91[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793665	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793666	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793677	0.82[EUR][1000 genomes]
rs2793688	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793691	0.81[EUR][1000 genomes]
rs706402	0.86[EUR][1000 genomes]
rs72675574	0.85[EUR][1000 genomes]
rs7512969	0.80[ASN][1000 genomes]
rs9436537	0.85[AMR][1000 genomes]
rs9436538	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9436999	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs947007	0.80[JPT][hapmap]
rs947008	0.80[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2792795	TTC4	cis	cerebellum	SCAN
rs2792795	HSPB11	cis	parietal	SCAN
rs2792795	QPCT	trans	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56720000-56724200	Enhancers	Placenta	Placenta
2	chr1:56720600-56724000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56720800-56724000	Enhancers	Adipose Nuclei	Adipose
4	chr1:56720800-56725200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56720800-56725400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:56721200-56725000	Enhancers	Psoas Muscle	Psoas
7	chr1:56721800-56725000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:56721800-56730000	Weak transcription	Ovary	ovary
9	chr1:56722200-56725000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr1:56722200-56725000	Weak transcription	Fetal Heart	heart
11	chr1:56722400-56724400	Enhancers	Right Atrium	heart
12	chr1:56722600-56724400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:56722800-56724000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:56722800-56724000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:56722800-56724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:56722800-56724200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:56722800-56726000	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:56723600-56724400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr1:56723600-56724800	Enhancers	Fetal Thymus	thymus
20	chr1:56723600-56725000	Enhancers	Stomach Smooth Muscle	stomach
21	chr1:56723600-56725600	Enhancers	Left Ventricle	heart
22	chr1:56723800-56724400	Enhancers	Brain Hippocampus Middle	brain
23	chr1:56723800-56725000	Enhancers	Brain Anterior Caudate	brain
24	chr1:56723800-56725200	Enhancers	Brain Cingulate Gyrus	brain

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