Variant report

Variant	rs2793666
Chromosome Location	chr1:56730028-56730029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56724876..56727299-chr1:56729656..56732190,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10158913	0.81[EUR][1000 genomes]
rs10789017	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11206753	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12117195	0.88[AMR][1000 genomes]
rs12120924	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12128949	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2096086	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2777758	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2792774	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2792775	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2792776	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2792783	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2792794	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2792795	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793660	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793661	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793663	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2793664	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2793665	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793672	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2793675	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793681	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2793683	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2793684	0.84[AMR][1000 genomes]
rs2793690	0.82[AMR][1000 genomes]
rs2793691	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4550099	0.86[EUR][1000 genomes]
rs61773389	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6663502	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6688582	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs706362	0.90[EUR][1000 genomes]
rs706371	0.87[EUR][1000 genomes]
rs7417415	0.84[EUR][1000 genomes]
rs7552430	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7553732	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778395	0.91[EUR][1000 genomes]
rs809018	0.90[EUR][1000 genomes]
rs9436537	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs947252	0.82[AMR][1000 genomes]
rs9787032	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516750	chr1:56728246-56731680	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56726400-56732400	Weak transcription	Left Ventricle	heart
2	chr1:56726600-56733400	Weak transcription	Placenta	Placenta
3	chr1:56728000-56731400	Weak transcription	HepG2	liver
4	chr1:56730000-56730200	Enhancers	Ovary	ovary
5	chr1:56730000-56730200	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links