Variant report

Variant	rs2793672
Chromosome Location	chr1:56751617-56751618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10789017	0.89[EUR][1000 genomes]
rs2096086	0.89[EUR][1000 genomes]
rs2777758	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2792774	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792775	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792776	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2792783	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2793663	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2793665	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2793666	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2793675	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2793677	0.81[EUR][1000 genomes]
rs2793681	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2793683	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2793684	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2793688	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2793690	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793691	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61773389	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6663502	0.81[AMR][1000 genomes]
rs6688582	0.81[AMR][1000 genomes]
rs7417415	0.81[EUR][1000 genomes]
rs7552430	0.81[AMR][1000 genomes]
rs7553732	0.81[AMR][1000 genomes]
rs9436537	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9436538	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9436999	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs947252	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9787032	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56748400-56759600	Weak transcription	Aorta	Aorta
3	chr1:56750000-56752200	Enhancers	HepG2	liver
4	chr1:56750000-56753400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56750200-56752000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:56750200-56752000	Enhancers	HSMMtube	muscle
7	chr1:56750200-56752200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:56750200-56752200	Enhancers	Left Ventricle	heart
9	chr1:56750200-56752600	Enhancers	Fetal Muscle Leg	muscle
10	chr1:56750200-56752800	Enhancers	Adipose Nuclei	Adipose
11	chr1:56750200-56752800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr1:56750200-56753000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr1:56750800-56752000	Enhancers	HUVEC	blood vessel
14	chr1:56751000-56751800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:56751000-56751800	Enhancers	Lung	lung
16	chr1:56751000-56752000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:56751000-56752000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:56751000-56752000	Enhancers	Fetal Stomach	stomach
19	chr1:56751000-56752200	Enhancers	Dnd41	blood
20	chr1:56751000-56752800	Enhancers	Psoas Muscle	Psoas
21	chr1:56751000-56753000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:56751000-56753200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:56751000-56753600	Enhancers	Placenta	Placenta
24	chr1:56751000-56753600	Enhancers	Placenta Amnion	Placenta Amnion
25	chr1:56751200-56752000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr1:56751200-56752000	Enhancers	Fetal Thymus	thymus
27	chr1:56751200-56752800	Enhancers	Right Atrium	heart
28	chr1:56751200-56753400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr1:56751200-56753400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr1:56751200-56756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:56751400-56756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:56751400-56757600	Weak transcription	Pancreas	Pancrea
33	chr1:56751600-56752000	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links