Variant report

Variant	rs7552430
Chromosome Location	chr1:56693899-56693900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10158913	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789017	0.89[EUR][1000 genomes]
rs11206753	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12117195	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12120924	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12128949	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2096086	0.89[EUR][1000 genomes]
rs2777758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2792774	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792776	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2792794	0.82[CEU][hapmap]
rs2793661	0.81[CEU][hapmap]
rs2793663	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793665	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793666	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793672	0.81[AMR][1000 genomes]
rs2793691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61773389	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6663502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6688582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706362	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706371	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706384	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs706388	0.86[EUR][1000 genomes]
rs7553732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778395	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778429	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs778432	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs809018	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436537	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9787032	0.83[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56692800-56694800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:56693000-56694000	Enhancers	Fetal Lung	lung
3	chr1:56693600-56694200	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56693600-56694200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr1:56693600-56696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:56693800-56694000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:56693800-56694000	Enhancers	Psoas Muscle	Psoas
8	chr1:56693800-56695400	Enhancers	Fetal Kidney	kidney

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