Variant report

Variant	rs778429
Chromosome Location	chr1:56662554-56662555
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10158913	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10789017	0.81[AMR][1000 genomes]
rs11206753	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12117195	0.90[EUR][1000 genomes]
rs12120924	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128949	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096086	0.81[AMR][1000 genomes]
rs2777758	0.82[EUR][1000 genomes]
rs2792774	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792775	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792776	0.84[EUR][1000 genomes]
rs2793691	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61773389	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6663502	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6688582	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706362	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706371	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706384	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706388	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706402	0.81[AMR][1000 genomes]
rs7552430	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7553732	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778395	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778432	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs809018	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9787032	0.81[AMR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
3	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
4	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
5	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:56657800-56663000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr1:56657800-56663200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:56657800-56665800	Weak transcription	Fetal Kidney	kidney
10	chr1:56658200-56665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:56659800-56662800	Weak transcription	Psoas Muscle	Psoas
12	chr1:56659800-56664200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:56661200-56663000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:56661200-56665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:56661800-56663200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:56661800-56663600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr1:56661800-56666000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:56662000-56663200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr1:56662200-56663000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr1:56662200-56663000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:56662200-56663000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:56662200-56663200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr1:56662200-56663200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:56662200-56663200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:56662200-56663400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr1:56662200-56665600	Weak transcription	NHDF-Ad	bronchial
27	chr1:56662200-56668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:56662400-56662600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr1:56662400-56662800	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr1:56662400-56662800	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:56662400-56663200	Weak transcription	Adipose Nuclei	Adipose

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