Variant report

Variant	rs12120924
Chromosome Location	chr1:56657604-56657605
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10158913	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11206753	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12117195	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12128949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2777758	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2792774	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792775	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792776	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2793663	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793665	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793666	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793691	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61773389	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6663502	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6688582	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706362	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706371	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706384	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706388	0.97[EUR][1000 genomes]
rs7552430	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7553732	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778395	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778429	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778432	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs809018	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9436537	0.91[AMR][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
5	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
6	chr1:56653800-56669400	Enhancers	Placenta	Placenta
7	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:56655000-56658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
10	chr1:56655800-56658200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr1:56656000-56657800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:56656000-56658000	Enhancers	Osteobl	bone
13	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
17	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
18	chr1:56656600-56658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr1:56656800-56657800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:56657000-56657800	Enhancers	Fetal Kidney	kidney
22	chr1:56657000-56659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:56657000-56661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr1:56657000-56662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:56657000-56662200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:56657000-56662200	Weak transcription	Adipose Nuclei	Adipose
27	chr1:56657200-56657800	Enhancers	A549	lung
28	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:56657400-56657800	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr1:56657600-56657800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:56657600-56657800	Enhancers	Ovary	ovary
32	chr1:56657600-56657800	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr1:56657600-56658400	Enhancers	HepG2	liver
34	chr1:56657600-56660400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:56657600-56661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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