Variant report

Variant	rs6688582
Chromosome Location	chr1:56695043-56695044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158913	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789017	0.89[EUR][1000 genomes]
rs11206753	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12117195	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12120924	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12128949	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2096086	0.89[EUR][1000 genomes]
rs2777758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792774	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792776	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2793663	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793665	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793666	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793672	0.81[AMR][1000 genomes]
rs2793691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61773389	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6663502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706362	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706371	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706384	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706388	0.86[EUR][1000 genomes]
rs7552430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7553732	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778395	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778429	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778432	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs809018	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9436537	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9787032	0.83[EUR][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56693600-56696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56693800-56695400	Enhancers	Fetal Kidney	kidney
3	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
4	chr1:56694200-56695200	Enhancers	Dnd41	blood
5	chr1:56694400-56695200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:56694600-56695200	Enhancers	Fetal Muscle Leg	muscle
7	chr1:56694800-56695200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:56694800-56695200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr1:56694800-56695200	Enhancers	Brain Anterior Caudate	brain
10	chr1:56694800-56695200	Enhancers	Brain Hippocampus Middle	brain
11	chr1:56694800-56695200	Enhancers	Psoas Muscle	Psoas
12	chr1:56694800-56695400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr1:56694800-56695400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr1:56694800-56695600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr1:56694800-56696000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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