Variant report

Variant	rs778432
Chromosome Location	chr1:56666809-56666810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10158913	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10789017	0.81[AMR][1000 genomes]
rs11206753	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12117195	0.90[EUR][1000 genomes]
rs12120924	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12128949	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096086	0.81[AMR][1000 genomes]
rs2777758	0.82[EUR][1000 genomes]
rs2792774	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792775	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792776	0.84[EUR][1000 genomes]
rs2793691	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61773389	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6663502	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6688582	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706362	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706371	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs706384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs706402	0.81[AMR][1000 genomes]
rs7552430	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7553732	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778395	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs809018	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9787032	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs778432	TTC4	cis	cerebellum	SCAN

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr1:56662200-56668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:56662800-56667600	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56663000-56667200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr1:56663200-56668000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr1:56663200-56670000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:56664400-56669200	Weak transcription	Right Ventricle	heart
9	chr1:56664800-56667000	Enhancers	Hela-S3	cervix
10	chr1:56665600-56668800	Enhancers	NHDF-Ad	bronchial
11	chr1:56665600-56669000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:56666000-56667000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56666200-56667400	Enhancers	Fetal Stomach	stomach
14	chr1:56666200-56668400	Weak transcription	Dnd41	blood
15	chr1:56666400-56668400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr1:56666400-56672200	Weak transcription	Left Ventricle	heart
17	chr1:56666800-56667400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:56666800-56668200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:56666800-56668200	Enhancers	Psoas Muscle	Psoas
20	chr1:56666800-56669200	Weak transcription	Fetal Lung	lung

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