Variant report

Variant	rs7553732
Chromosome Location	chr1:56698256-56698257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10158913	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10789017	0.89[EUR][1000 genomes]
rs11206753	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12117195	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12120924	0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12128949	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2096086	0.89[EUR][1000 genomes]
rs2777758	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2792774	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792775	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792776	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2792794	0.81[CEU][hapmap]
rs2793661	0.81[CEU][hapmap];0.81[MEX][hapmap]
rs2793663	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793665	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793666	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2793672	0.81[AMR][1000 genomes]
rs2793691	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61773389	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6663502	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6688582	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706362	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706371	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706384	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs706388	0.86[EUR][1000 genomes]
rs7552430	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778395	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778429	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778432	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs809018	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9436537	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9787032	0.83[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7553732	ACOT11	cis	cerebellum	SCAN
rs7553732	TTC4	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
2	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56695600-56700000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:56696600-56701800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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