Variant report

Variant	rs11206753
Chromosome Location	chr1:56660979-56660980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10158913	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10789017	0.83[AMR][1000 genomes]
rs11206749	0.83[AMR][1000 genomes]
rs11206750	0.83[AMR][1000 genomes]
rs12117195	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12120924	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12128949	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1331862	0.83[AMR][1000 genomes]
rs1360504	0.83[AMR][1000 genomes]
rs2096086	0.83[AMR][1000 genomes]
rs2777758	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2792774	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2792775	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2792776	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2793663	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793665	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793666	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2793691	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61773389	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6663502	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6688582	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs706362	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs706371	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs706384	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706388	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72675574	0.83[AMR][1000 genomes]
rs7552430	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7553732	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778395	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778429	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778432	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs809018	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9436537	0.81[AMR][1000 genomes]
rs9787032	0.83[AMR][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653800-56669400	Enhancers	Placenta	Placenta
2	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
3	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
7	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
8	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr1:56657000-56661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:56657000-56662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:56657000-56662200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:56657000-56662200	Weak transcription	Adipose Nuclei	Adipose
13	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:56657600-56661800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr1:56657600-56667800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:56657800-56663000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:56657800-56663200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr1:56657800-56665800	Weak transcription	Fetal Kidney	kidney
19	chr1:56658000-56662200	Weak transcription	Fetal Muscle Leg	muscle
20	chr1:56658200-56665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:56659400-56662200	Enhancers	NHDF-Ad	bronchial
22	chr1:56659800-56661800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:56659800-56662200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr1:56659800-56662800	Weak transcription	Psoas Muscle	Psoas
25	chr1:56659800-56664200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr1:56660000-56661200	Enhancers	NHLF	lung
27	chr1:56660200-56662200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:56660400-56661000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:56660400-56661000	Enhancers	Osteobl	bone
30	chr1:56660400-56661200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:56660600-56661200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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