Variant report

Variant	rs1331862
Chromosome Location	chr1:56642998-56642999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10158913	0.81[AMR][1000 genomes]
rs11206749	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11206750	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11206753	0.83[AMR][1000 genomes]
rs1360504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2792794	0.82[CEU][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes]
rs2792795	0.85[EUR][1000 genomes]
rs2793660	0.85[EUR][1000 genomes]
rs2793661	0.82[CEU][hapmap];0.84[CHB][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs2793664	0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs4927306	0.82[EUR][1000 genomes]
rs706402	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72675574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1331862	HSPB11	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56637000-56646200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr1:56640200-56645800	Weak transcription	Small Intestine	intestine
3	chr1:56640200-56651200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:56640400-56645000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56640400-56645400	Weak transcription	Psoas Muscle	Psoas
6	chr1:56640400-56645800	Weak transcription	NHLF	lung
7	chr1:56640400-56646000	Weak transcription	NHDF-Ad	bronchial
8	chr1:56641200-56646000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:56641200-56646000	Weak transcription	Osteobl	bone
10	chr1:56641600-56645800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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