Variant report

Variant	rs2793664
Chromosome Location	chr1:56728246-56728247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11206749	0.85[EUR][1000 genomes]
rs11206750	0.85[EUR][1000 genomes]
rs12564025	0.96[ASN][1000 genomes]
rs1331862	0.85[EUR][1000 genomes]
rs1341337	0.81[ASN][1000 genomes]
rs1360504	0.83[EUR][1000 genomes]
rs1417768	0.81[ASN][1000 genomes]
rs1417770	0.96[ASN][1000 genomes]
rs17113557	0.80[ASN][1000 genomes]
rs1935050	0.86[JPT][hapmap]
rs2777758	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2792774	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2792775	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2792776	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2792794	0.91[CEU][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2792795	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793660	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793661	0.91[CEU][hapmap];0.90[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2793662	0.86[JPT][hapmap]
rs2793663	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2793665	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2793666	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2793677	0.84[EUR][1000 genomes]
rs2793688	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2793691	0.80[EUR][1000 genomes]
rs706402	0.85[EUR][1000 genomes]
rs72675574	0.85[EUR][1000 genomes]
rs9436537	0.85[AMR][1000 genomes]
rs9436538	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9436999	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs947007	0.80[GIH][hapmap];0.90[JPT][hapmap]
rs947008	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516750	chr1:56728246-56731680	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56721800-56730000	Weak transcription	Ovary	ovary
2	chr1:56725000-56730000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56726400-56732400	Weak transcription	Left Ventricle	heart
4	chr1:56726600-56733400	Weak transcription	Placenta	Placenta
5	chr1:56728000-56731400	Weak transcription	HepG2	liver

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