Variant report

Variant	rs12564025
Chromosome Location	chr1:56716092-56716093
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1119073	0.88[CHB][hapmap]
rs1149646	0.83[AMR][1000 genomes]
rs1149648	0.84[AMR][1000 genomes]
rs1149651	0.86[AMR][1000 genomes]
rs1230036	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1234587	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1341337	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1417768	0.81[ASN][1000 genomes]
rs1417770	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246574	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2487318	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2792773	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2792794	0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2792795	0.97[ASN][1000 genomes]
rs2792797	0.83[AFR][1000 genomes]
rs2793660	0.97[ASN][1000 genomes]
rs2793661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2793662	0.86[JPT][hapmap]
rs2793664	0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs4927308	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706356	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706358	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706389	0.84[AMR][1000 genomes]
rs706392	0.84[AMR][1000 genomes]
rs706396	0.84[AMR][1000 genomes]
rs778388	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778390	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778391	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778392	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778393	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778394	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778396	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778399	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778400	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778401	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778402	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778403	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778404	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778405	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778409	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778411	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778415	0.83[AMR][1000 genomes]
rs778419	0.84[AMR][1000 genomes]
rs778421	0.84[AMR][1000 genomes]
rs778423	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778427	0.84[AMR][1000 genomes]
rs801273	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs813574	0.82[AMR][1000 genomes]
rs947007	0.80[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56714200-56717000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:56714600-56716600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr1:56714600-56717400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:56715000-56716400	Enhancers	Primary B cells from cord blood	blood
7	chr1:56715400-56716600	Enhancers	Colon Smooth Muscle	Colon
8	chr1:56715400-56716800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56715400-56717800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:56715400-56718000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:56716000-56716400	Weak transcription	Adipose Nuclei	Adipose

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