Variant report

Variant	rs778396
Chromosome Location	chr1:56699190-56699191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11206759	0.81[ASN][1000 genomes]
rs1149646	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1149648	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1149651	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12126843	0.82[ASN][1000 genomes]
rs1230036	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1234587	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12564025	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1417770	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2246574	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2487318	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2792773	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4927308	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs706356	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs706358	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs706389	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs706392	0.83[AMR][1000 genomes]
rs706396	0.83[AMR][1000 genomes]
rs778388	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778390	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778391	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778392	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778393	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778394	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs778399	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778400	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778401	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778402	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778403	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778404	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778405	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778407	0.89[ASN][1000 genomes]
rs778409	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778411	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778412	0.89[ASN][1000 genomes]
rs778413	0.86[ASN][1000 genomes]
rs778415	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778419	0.83[AMR][1000 genomes]
rs778421	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs778423	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778427	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs801273	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs813574	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
2	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
3	chr1:56695600-56700000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:56696600-56701800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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