Variant report

Variant	rs778407
Chromosome Location	chr1:56704424-56704425
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11206760	0.83[ASN][1000 genomes]
rs11206762	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1230036	0.99[ASN][1000 genomes]
rs1234587	0.99[ASN][1000 genomes]
rs2246574	0.96[ASN][1000 genomes]
rs2487318	0.98[ASN][1000 genomes]
rs2792773	0.98[ASN][1000 genomes]
rs2792794	0.84[CEU][hapmap]
rs2793661	0.84[CEU][hapmap]
rs4927308	0.93[ASN][1000 genomes]
rs706356	0.89[ASN][1000 genomes]
rs706358	0.92[ASN][1000 genomes]
rs706376	0.82[JPT][hapmap]
rs706397	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs706398	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs706399	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778129	0.88[EUR][1000 genomes]
rs778130	0.89[EUR][1000 genomes]
rs778384	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778385	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778388	0.91[ASN][1000 genomes]
rs778390	0.92[ASN][1000 genomes]
rs778391	0.92[ASN][1000 genomes]
rs778392	0.93[ASN][1000 genomes]
rs778393	0.92[ASN][1000 genomes]
rs778394	0.93[ASN][1000 genomes]
rs778396	0.89[ASN][1000 genomes]
rs778399	0.96[ASN][1000 genomes]
rs778400	0.96[ASN][1000 genomes]
rs778401	0.96[ASN][1000 genomes]
rs778402	0.97[ASN][1000 genomes]
rs778403	0.94[ASN][1000 genomes]
rs778404	0.98[ASN][1000 genomes]
rs778405	0.98[ASN][1000 genomes]
rs778406	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs778409	0.99[ASN][1000 genomes]
rs778411	0.99[ASN][1000 genomes]
rs778412	1.00[ASN][1000 genomes]
rs778413	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs778416	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778417	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778418	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs801273	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs778407	ZFYVE9	cis	cerebellum	SCAN
rs778407	HSPB11	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
2	chr1:56702200-56721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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