Variant report

Variant	rs778384
Chromosome Location	chr1:56637166-56637167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs706397	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706398	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706399	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs706402	0.82[EUR][1000 genomes]
rs778129	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778130	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs778385	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778407	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778416	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778417	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778418	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778423	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs778384	HSPB11	cis	parietal	SCAN
rs778384	ZFYVE9	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56636200-56637200	Enhancers	Fetal Heart	heart
2	chr1:56636400-56637200	Enhancers	Fetal Kidney	kidney
3	chr1:56636400-56640000	Weak transcription	NHLF	lung
4	chr1:56636600-56637200	Enhancers	Left Ventricle	heart
5	chr1:56636600-56637800	Enhancers	A549	lung
6	chr1:56636600-56639800	Weak transcription	Osteobl	bone
7	chr1:56636800-56637200	Flanking Active TSS	HepG2	liver
8	chr1:56637000-56639200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:56637000-56640000	Weak transcription	NHDF-Ad	bronchial
10	chr1:56637000-56646200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links