Variant report

Variant	rs778388
Chromosome Location	chr1:56696157-56696158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11206759	0.81[ASN][1000 genomes]
rs11206762	0.80[ASN][1000 genomes]
rs1149646	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1149648	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1149651	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12118289	0.82[ASN][1000 genomes]
rs12119413	0.82[ASN][1000 genomes]
rs12126843	0.81[ASN][1000 genomes]
rs1230036	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1234587	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12564025	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1417770	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2246574	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2487318	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2792773	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4927308	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6694549	0.82[ASN][1000 genomes]
rs706356	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706358	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs706389	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706392	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs706396	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778396	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778400	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs778401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778402	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778403	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778404	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs778405	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs778407	0.91[ASN][1000 genomes]
rs778409	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs778412	0.91[ASN][1000 genomes]
rs778413	0.88[ASN][1000 genomes]
rs778415	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs778419	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778421	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778423	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs778427	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs801273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs813574	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56693600-56696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56694000-56699800	Weak transcription	Fetal Lung	lung
3	chr1:56695200-56721200	Weak transcription	Psoas Muscle	Psoas
4	chr1:56695400-56696600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56695600-56700000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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