Variant report

Variant	rs706392
Chromosome Location	chr1:56653611-56653612
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1149646	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149648	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1149651	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1230036	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1234587	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12564025	0.84[AMR][1000 genomes]
rs1417770	0.83[AMR][1000 genomes]
rs2246574	0.81[EUR][1000 genomes]
rs2487318	0.80[EUR][1000 genomes]
rs2792773	0.83[EUR][1000 genomes]
rs4927308	0.83[EUR][1000 genomes]
rs706356	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706358	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs706389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs706396	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778388	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778390	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778391	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778392	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778393	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778394	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778396	0.83[AMR][1000 genomes]
rs778399	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778400	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778401	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778402	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778403	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778404	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778405	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778409	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778411	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778415	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs778419	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778421	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778423	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs778427	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs801273	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs813574	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56645600-56654000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:56646800-56653800	Weak transcription	Fetal Muscle Leg	muscle
3	chr1:56647000-56655800	Weak transcription	Aorta	Aorta
4	chr1:56647200-56655000	Weak transcription	Fetal Kidney	kidney
5	chr1:56647600-56653800	Weak transcription	NHDF-Ad	bronchial
6	chr1:56647800-56654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:56647800-56654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:56647800-56654600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:56649800-56653800	Weak transcription	HepG2	liver
10	chr1:56651800-56654000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:56651800-56654400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:56652000-56654800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr1:56652200-56653800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr1:56652200-56653800	Weak transcription	Fetal Stomach	stomach
15	chr1:56652200-56654000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:56652200-56654200	Weak transcription	Brain Substantia Nigra	brain
17	chr1:56652200-56654400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr1:56652200-56654600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:56652200-56656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:56652400-56654200	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:56653400-56654400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:56653600-56654000	Weak transcription	Fetal Lung	lung
25	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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