Variant report

Variant	rs706389
Chromosome Location	chr1:56655602-56655603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1149646	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1149648	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1149649	0.81[AFR][1000 genomes]
rs1149651	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1230036	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1234587	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12564025	0.84[AMR][1000 genomes]
rs1417770	0.83[AMR][1000 genomes]
rs2246574	0.82[EUR][1000 genomes]
rs2487318	0.81[EUR][1000 genomes]
rs2792773	0.84[EUR][1000 genomes]
rs4927308	0.84[EUR][1000 genomes]
rs706356	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706358	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs706392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs706396	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs778388	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778390	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778391	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778392	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778393	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778394	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778396	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs778399	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778400	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778401	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778402	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778403	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778404	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778405	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778409	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778411	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs778415	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs778419	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778421	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778423	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs778427	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs801273	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs813574	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56647000-56655800	Weak transcription	Aorta	Aorta
2	chr1:56652200-56656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:56653000-56657400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:56653800-56656200	Enhancers	Fetal Stomach	stomach
7	chr1:56653800-56657000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:56653800-56657000	Enhancers	Adipose Nuclei	Adipose
9	chr1:56653800-56657000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
11	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
12	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
13	chr1:56653800-56669400	Enhancers	Placenta	Placenta
14	chr1:56654000-56656000	Enhancers	Fetal Lung	lung
15	chr1:56654000-56656200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:56654000-56657200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr1:56654200-56655800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:56654200-56656200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr1:56654200-56656200	Enhancers	Brain Substantia Nigra	brain
21	chr1:56654200-56657000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:56654400-56656200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr1:56654400-56657400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:56654400-56657600	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr1:56654600-56656000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:56654600-56656200	Enhancers	H9 Cell Line	embryonic stem cell
27	chr1:56654600-56656200	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr1:56654600-56656600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr1:56654600-56657000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr1:56654800-56655800	Enhancers	Brain Cingulate Gyrus	brain
31	chr1:56654800-56655800	Weak transcription	Left Ventricle	heart
32	chr1:56654800-56655800	Weak transcription	Right Atrium	heart
33	chr1:56654800-56656200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr1:56654800-56656800	Enhancers	A549	lung
35	chr1:56655000-56655800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr1:56655000-56655800	Enhancers	Brain Anterior Caudate	brain
37	chr1:56655000-56656000	Enhancers	Stomach Smooth Muscle	stomach
38	chr1:56655000-56656800	Enhancers	H1 Cell Line	embryonic stem cell
39	chr1:56655000-56657600	Flanking Active TSS	HepG2	liver
40	chr1:56655000-56658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
42	chr1:56655400-56656200	Enhancers	Sigmoid Colon	Sigmoid Colon
43	chr1:56655400-56656600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:56655600-56655800	Enhancers	Brain Angular Gyrus	brain
45	chr1:56655600-56655800	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr1:56655600-56656800	Enhancers	HSMMtube	muscle
47	chr1:56655600-56657400	Weak transcription	Ovary	ovary

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