Variant report

Variant	rs1149649
Chromosome Location	chr1:56657497-56657498
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1149646	0.80[AFR][1000 genomes]
rs1149647	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1149648	0.80[AFR][1000 genomes]
rs1236961	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs697583	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs706375	0.81[AMR][1000 genomes]
rs706376	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs706383	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs706389	0.81[AFR][1000 genomes]
rs706395	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs778382	0.81[AMR][1000 genomes]
rs778423	0.86[AFR][1000 genomes]
rs778425	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs778426	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs778428	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs778430	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs778431	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56653000-56658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56653600-56658000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:56653800-56658000	Enhancers	Fetal Muscle Leg	muscle
4	chr1:56653800-56658200	Enhancers	NHDF-Ad	bronchial
5	chr1:56653800-56658400	Enhancers	Psoas Muscle	Psoas
6	chr1:56653800-56669400	Enhancers	Placenta	Placenta
7	chr1:56654000-56657800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:56654400-56657600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr1:56655000-56657600	Flanking Active TSS	HepG2	liver
10	chr1:56655000-56658400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:56655200-56663800	Weak transcription	Right Ventricle	heart
12	chr1:56655800-56658200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:56656000-56657800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:56656000-56658000	Enhancers	Osteobl	bone
15	chr1:56656000-56662000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:56656200-56657600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr1:56656200-56662200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:56656200-56662200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:56656200-56663000	Weak transcription	Right Atrium	heart
20	chr1:56656200-56663400	Weak transcription	Left Ventricle	heart
21	chr1:56656600-56658800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:56656800-56657800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:56656800-56662200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:56657000-56657600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr1:56657000-56657800	Enhancers	Fetal Kidney	kidney
26	chr1:56657000-56659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:56657000-56661800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr1:56657000-56662200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr1:56657000-56662200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr1:56657000-56662200	Weak transcription	Adipose Nuclei	Adipose
31	chr1:56657200-56657600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr1:56657200-56657800	Enhancers	A549	lung
33	chr1:56657200-56665400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:56657400-56657800	Enhancers	Sigmoid Colon	Sigmoid Colon

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